Your browser doesn't support javascript.
loading
: 20 | 50 | 100
1 - 20 de 3.168
1.
J Chem Inf Model ; 64(8): 3192-3204, 2024 Apr 22.
Article En | MEDLINE | ID: mdl-38500402

This work presents new experimental viscosity and density data for aromatic and polyaromatic compounds in binary and ternary pyrene, 1-methylnaphthalene, and dodecane mixtures. The lack of experimental viscosity data for these mixtures requires the development of a new database, which is vital for understanding the behavior of mixtures in more complex systems, such as asphaltenes and fuels. The mixtures proposed in this work have been measured over a temperature range of (293.15 to 343.15) K at atmospheric pressure. Several mixture compositions have been studied at these conditions: 1.0, 2.5, 5.0, 7.5, 10.0, 12.5, and 15.0% pyrene mass fraction. The concentration of pyrene correlates with an increase in the viscosity and density values. At the lowest temperature in binary mixtures, the corresponding values reach 4.4217 mPa·s for viscosity and 1.0447 × 103 kg·m-3 for density, respectively. In ternary mixtures, the introduction of dodecane leads to the lowest maximum values of 3.5555 mPa·s for viscosity and 1.0112 × 103 kg·m-3 for density at the same temperature. The experimental data have been employed for the specific modification of viscosity models. These modifications could facilitate the prediction of the viscosity of mixtures that are more complex than those presented in this work. Various viscosity models have been employed, such as Linear, Ratcliff and Khan, modified UNIFAC-Visco, and Krieger-Dougherty. The settings in the models used reliably reproduce the experiment reliably. However, the Ratcliff model agrees excellently with the experiment, having a low standard deviation (2.0%) compared to other models. Furthermore, a model based on the equation of state of Guo is proposed to predict the viscosity values by modifying the specific parameters and adjusting them to the mixtures proposed in this work. The results from this study are compared to previous work, where pyrene, toluene, and heptane mixtures were analyzed. In this case, we find that the decrease of aggregation grade in the present systems is predicted by the model fixed in this work.


Alkanes , Naphthalenes , Pyrenes , Temperature , Pyrenes/chemistry , Viscosity , Naphthalenes/chemistry , Alkanes/chemistry , Models, Chemical , Polycyclic Aromatic Hydrocarbons/chemistry
2.
J Chem Inf Model ; 64(8): 3248-3259, 2024 Apr 22.
Article En | MEDLINE | ID: mdl-38528706

The molecular cross-sectional area (σ) has proved to be an interesting molecular measure not only in the field of adsorption phenomena on solids but also in biochemistry, physiology, or surfactant chemistry. The existing methods to estimate the cross-sectional areas are either not readily applicable or can only be applied to a limited number of compounds. The aim of this work was to describe a method, as general as possible, quick and easy to perform. To that end, the molecular cross-sectional areas were correlated with topological indices. The Emmett-Brunauer formula was used to calculate the reference cross-sectional areas (σEB) of 431 compounds. The correlations of the Wiener (W), hyper-Wiener (WW), Balaban (J), and Randic (χ) indices with σEB were compared for n-alkanes as well as branched and cyclic alkanes. Only the Wiener and hyper-Wiener indices correlated well with σEB, with the data being best fitted by power law regression curves. The lower degeneracy of the hyper-Wiener index did not translate into any significant gain of performance when correlated with σEB. Following the parsimony principle, the less complex Wiener index was thus selected to correlate with the σEB of compounds representing 31 other monofunctional and structural families. The integration of all the compound families into a single curve allowed a quick rough estimation of the cross-sectional areas. The specific reference equations σEB = qWp were determined for the 34 selected families, allowing the fast and reliable calculation of the cross-sectional area of any monofunctional compound.


Organic Chemicals , Organic Chemicals/chemistry , Alkanes/chemistry
3.
J Mol Graph Model ; 129: 108752, 2024 06.
Article En | MEDLINE | ID: mdl-38479237

On the basis of the atomic graph-theoretical index - aEAID (atomic Extended Adjacency matrix IDentification) and molecular adjacent topological index - ATID (Adjacent Topological IDentification) suggested by one of the authors (Zhang Q), a highly selective atomic topological index - aATID (atomic Adjacent Topological IDentification) index was suggested to identify the equivalent atoms in this study. The aATID index of an atom was derived from the number of the attached hydrogen atoms of the atom but omitting bond types. In this case, the suggested index can be used to identify equivalent atoms in chemistry but perhaps not equivalent in the molecular graph. To test the uniqueness of aATID indices, the virtual atomic data sets were derived from alkanes containing 15-20 carbon atoms and the isomers of Octogen, as well as a real data set was derived from the NCI database. Only four pairs of atoms from alkanes containing 20 carbons can't be discriminated by aATID, that is, four pairs of degenerates were found for this data set. To solve this problem, the aATID index was modified by introducing distance factors between atoms, and the 2-aATID index was suggested. Its uniqueness was examined by 5,939,902 atoms derived from alkanes containing 20 carbons and further 16,166,984 atoms from alkanes of 21 carbons, and no degenerates were found. In addition, another large real data set of 16,650,688 atoms derived from the PubChem database was also used to test the uniqueness of both aATID and 2-aATID. As a result, each atom was successfully discriminated by any of the two indices. Finally, the suggested aATID index was applied to the identification of duplicate atoms as data pretreatment for QSPR (Quantitative Structure-Property Relationships) studies.


Alkanes , Quantitative Structure-Activity Relationship , Isomerism , Alkanes/chemistry , Carbon/chemistry
4.
Water Res ; 252: 121249, 2024 Mar 15.
Article En | MEDLINE | ID: mdl-38330715

Groundwater, the world's most abundant source of freshwater, is rapidly depleting in many regions due to a variety of factors. Accurate forecasting of groundwater level (GWL) is essential for effective management of this vital resource, but it remains a complex and challenging task. In recent years, there has been a notable increase in the use of machine learning (ML) techniques to model GWL, with many studies reporting exceptional results. In this paper, we present a comprehensive review of 142 relevant articles indexed by the Web of Science from 2017 to 2023, focusing on key ML models, including artificial neural networks (ANN), adaptive neuro-fuzzy inference systems (ANFIS), support vector regression (SVR), evolutionary computing (EC), deep learning (DL), ensemble learning (EN), and hybrid-modeling (HM). We also discussed key modeling concepts such as dataset size, data splitting, input variable selection, forecasting time-step, performance metrics (PM), study zones, and aquifers, highlighting best practices for optimal GWL forecasting with ML. This review provides valuable insights and recommendations for researchers and water management agencies working in the field of groundwater management and hydrology.


Environmental Monitoring , Groundwater , Environmental Monitoring/methods , Forecasting , Machine Learning , Neural Networks, Computer , Alkanes/chemistry
6.
Chem Biodivers ; 21(2): e202301433, 2024 Feb.
Article En | MEDLINE | ID: mdl-38156744

The cuticle is important in the interaction between the plant and its environment, especially in the dry areas. Four species of junipers from the section Sabina wild growing in the Balkans were selected to study leaf wax composition using GC/MS and GC-FID and its surface morphology under SEM to understand the correlation between the distribution and/or habitat of these species and their cuticles. SEM micrographs showed continuous, smooth epicuticular layers with crusts in all species but with a species-specific distribution of different 3D crystalloid types and different cuticle thickness. n-C33 alkane was the most abundant compound, followed by n-C29, n-C31, and n-C35, depending on the species and the site. The average chain length (N) was the lowest in J. phoenicea, but with the greatest dispersion around it. At the same time, the two most continental species (J. foetidissima and J. excelsa) show the N with the lowest dispersion around it. The statistical analyses confirmed the significance of climate on the evolution of the specific epicuticular wax composition in studied junipers.


Juniperus , Juniperus/chemistry , Waxes/chemistry , Balkan Peninsula , Gas Chromatography-Mass Spectrometry , Alkanes/chemistry , Plant Leaves/chemistry
7.
Acc Chem Res ; 56(24): 3665-3675, 2023 Dec 19.
Article En | MEDLINE | ID: mdl-38032826

ConspectusEvery year, perhaps as much as 800 million tons of hydrocarbons enters the environment; alkanes make up a large percentage of it. Most are transformed by organisms that utilize these molecules as sources of energy and carbon. Both aerobic and anaerobic alkane transformation chemistries exist, capitalizing on the presence of alkanes in both oxic and anoxic environments. Over the past 40 years, tremendous progress has been made in understanding the structure and mechanism of enzymes that catalyze the transformation of methane. By contrast, progress involving enzymes that transform liquid alkanes has been slower with the first structures of AlkB, the predominant aerobic alkane hydroxylase in the environment, appearing in 2023. Because of the fundamental importance of C-H bond activation chemistries, interest in understanding how biology activates and transforms alkanes is high.In this Account, we focus on steps we have taken to understand the mechanism and structure of alkane monooxygenase (AlkB), the metalloenzyme that dominates the transformation of liquid alkanes in the environment (not to be confused with another AlkB that is an α-ketogluturate-dependent enzyme involved in DNA repair). First, we briefly describe what is known about the prevalence of AlkB in the environment and its role in the carbon cycle. Then we review the key findings from our recent high-resolution cryoEM structure of AlkB and highlight important similarities and differences in the structures of members of class III diiron enzymes. Functional studies, which we summarize, from a number of single residue variants enable us to say a great deal about how the structure of AlkB facilitates its function. Next, we overview work from our laboratories using mechanistically diagnostic radical clock substrates to characterize the mechanism of AlkB and contextualize the results we have obtained on AlkB with results we have obtained on other alkane-oxidizing enzymes and explain these results in light of the enzyme's structure. Finally, we integrate recent work in our laboratories with information from prior studies of AlkB, and relevant model systems, to create a holistic picture of the enzyme. We end by pointing to critical questions that still need to be answered, questions about the electronic structure of the active site of the enzyme throughout the reaction cycle and about whether and to what extent the enzyme plays functional roles in biology beyond simply initiating the degradation of alkanes.


Alkanes , Hydrocarbons , Cytochrome P-450 CYP4A/chemistry , Cytochrome P-450 CYP4A/genetics , Cytochrome P-450 CYP4A/metabolism , Alkanes/chemistry , Alkanes/metabolism
8.
Int J Mol Sci ; 24(19)2023 Oct 03.
Article En | MEDLINE | ID: mdl-37834311

A series of bifunctional catalysts, MoS2/Al2O3 (70 wt.%), zeolite (30 wt.%) (zeolite-ZSM-5, ZSM-12, and ZSM-22), and silica aluminophosphate SAPO-11, were synthesized for hydroconversion of methyl palmitate (10 wt.% in dodecane) in a trickle-bed reactor. Mo loading was about 7 wt.%. Catalysts and supports were characterized by different physical-chemical methods (HRTEM-EDX, SEM-EDX, XRD, N2 physisorption, and FTIR spectroscopy). Hydroprocessing was performed at a temperature of 250-350 °C, hydrogen pressure of 3.0-5.0 MPa, liquid hourly space velocity (LHSV) of 36 h-1, and an H2/feed ratio of 600 Nm3/m3. Complete conversion of oxygen-containing compounds was achieved at 310 °C in the presence of MoS2/Al2O3-zeolite catalysts; the selectivity for the conversion of methyl palmitate via the 'direct' hydrodeoxygenation (HDO) route was over 85%. The yield of iso-alkanes gradually increases in order: MoS2/Al2O3 < MoS2/Al2O3-ZSM-12 < MoS2/Al2O3-ZSM-5 < MoS2/Al2O3-SAPO-11 < MoS2/Al2O3-ZSM-22. The sample MoS2/Al2O3-ZSM-22 demonstrated the highest yield of iso-alkanes (40%). The hydroisomerization activity of the catalysts was in good correlation with the concentration of Brønsted acid sites in the synthesized supports.


Molybdenum , Zeolites , Zeolites/chemistry , Alkanes/chemistry , Silicon Dioxide
9.
Biointerphases ; 18(4)2023 07 01.
Article En | MEDLINE | ID: mdl-37602771

This article discusses the challenges and potential solutions for managing wastewater sludge that contains per- and polyfluoroalkyl substances (PFAS), using the experience in Maine as a guide toward addressing the issue nationally. Traditional wastewater treatment, designed to remove excess organic waste and nutrients, does not eliminate persistent toxic pollutants like PFAS, instead partitioning the chemicals between discharged effluent and the remaining solids in sludge. PFAS chemistry, the molecular size, the alkyl chain length, fluorine saturation, the charge of the head group, and the composition of the surrounding matrix influence PFAS partitioning between soil and water. Land application of sludge, incineration, and storage in a landfill are the traditional management options. Land application of Class B sludge on agricultural fields in Maine peaked in the 1990s, totaling over 2 × 106 cu yd over a 40-year period and has contaminated certain food crops and animal forage, posing a threat to the food supply and the environment. Additional Class A EQ (Exceptional Quality) composted sludge was also applied to Maine farmland. The State of Maine banned the land application of wastewater sludge in August 2022. Most sludge was sent to the state-owned Juniper Ridge Landfill, which accepted 94 270 tons of dewatered sludge in 2022, a 14% increase over 2019. Between 2019 and 2022, the sum of perfluorooctane sulfonate (PFOS) and perfluorooctanoic acid (PFOA) concentrations in sludge sent to the landfill ranged from 1.2 to 104.9 ng/g dw. In 2022, the landfill generated 71.6 × 106 l of leachate. The concentration of sum of six PFAS in the leachate increased sixfold between 2021 and 2022, reaching 2 441 ng/l. The retention of PFAS within solid-waste landfills and the potential for long-term release of PFAS through liners into groundwater require ongoing monitoring. Thermal treatment, incineration, or pyrolysis can theoretically mineralize PFAS at high temperatures, yet the strong C-F bond and reactivity of fluorine require extreme temperatures for complete mineralization. Future alternatives may include interim options such as preconditioning PFAS with nonpolar solvents prior to immobilization in landfills, removing PFAS from leachate, and interrupting the cycle of PFAS moving from landfill, via leachate, to wastewater treatment, and then back to the landfill via sludge. Long-term solutions may involve destructive technologies such as electron beam irradiation, electrochemical advanced oxidation, or hydrothermal liquefaction. The article highlights the need for innovative and sustainable solutions for managing PFAS-contaminated wastewater sludge.


Fluorocarbons , Sewage , Animals , Alkanes/chemistry , Fluorine , Maine , Wastewater
10.
Nanoscale ; 15(24): 10295-10305, 2023 Jun 23.
Article En | MEDLINE | ID: mdl-37272661

Chemical patterning surfaces is relevant in several different domains of science and technology with exciting possibilities in electronics, catalysis, sensing, and photonics. Here, we present a novel strategy for chemical patterning of graphite using a combination of covalent and non-covalent approaches. Building on our previous work, where self-assembled monolayers of linear alkanes were used as sacrificial masks for directing the covalent anchoring of aryl groups to the graphite surface in sub-10 nm arrays, we present a modified design of a template alkane with alkoxy terminal groups which allowed better pattern transfer fidelity in comparison to simple linear alkanes. We also explored the use of chronoamperometry (CA) instead of previously used cyclic voltammetry (CV) for the functionalization process, which enabled patterning of the graphite surface at two-different length scales: few hundred nanometer circular patterns interspersed with sub-10 nm linear arrays. The covalent chemical patterning process has been studied in detail using CV and CA measurements whereas the patterned substrates have been thoroughly characterized using Raman spectroscopy, scanning tunnelling microscopy (STM) and atomic force microscopy (AFM). Based on the comparison between the pattern transfer fidelity of previously studied alkanes and newly synthesized alkoxy alkane, we discuss plausible molecular mechanism of pattern transfer.


Graphite , Graphite/chemistry , Microscopy, Atomic Force/methods , Nanotechnology/methods , Alkanes/chemistry
11.
Org Lett ; 25(25): 4632-4637, 2023 Jun 30.
Article En | MEDLINE | ID: mdl-37314942

Herein, by exploiting different activation modes of fluoroamides, we achieved α- and δ-C(sp3)-H alkylation of nitroalkanes with switchable regioselectivity. Cu catalysis enabled the interception of a distal C-centered radical by a N-centered radical to couple nitroalkanes and unactivated δ-C-H bonds. In addition, imines generated in situ by fluoroamides were trapped by nitroalkanes to realize the α-C-H alkylation of amides. Both of those scalable protocols have broad substrate scopes and good functional group tolerance.


Alkanes , Nitro Compounds , Alkanes/chemistry , Alkylation , Nitro Compounds/chemistry , Catalysis , Amides/chemistry
12.
Nat Commun ; 14(1): 2180, 2023 04 17.
Article En | MEDLINE | ID: mdl-37069165

Alkanes are the most energy-rich form of carbon and are widely dispersed in the environment. Their transformation by microbes represents a key step in the global carbon cycle. Alkane monooxygenase (AlkB), a membrane-spanning metalloenzyme, converts straight chain alkanes to alcohols in the first step of the microbially-mediated degradation of alkanes, thereby playing a critical role in the global cycling of carbon and the bioremediation of oil. AlkB biodiversity is attributed to its ability to oxidize alkanes of various chain lengths, while individual AlkBs target a relatively narrow range. Mechanisms of substrate selectivity and catalytic activity remain elusive. Here we report the cryo-EM structure of AlkB, which provides a distinct architecture for membrane enzymes. Our structure and functional studies reveal an unexpected diiron center configuration and identify molecular determinants for substrate selectivity. These findings provide insight into the catalytic mechanism of AlkB and shed light on its function in alkane-degrading microorganisms.


AlkB Enzymes , Alkanes , Carbon , Alkanes/chemistry , Biodegradation, Environmental , Carbon/metabolism , Oxidation-Reduction , AlkB Enzymes/chemistry
13.
Int J Mol Sci ; 24(8)2023 Apr 20.
Article En | MEDLINE | ID: mdl-37108728

We demonstrate that a series of perfluorinated para-oligophenylenes C6F5-(C6F4)n-C6F5 (n = 1-3) produce exciplexes with N,N-dimethylaniline (DMA) in degassed X-irradiated n-dodecane solutions. The optical characterization of the compounds shows that their short fluorescence lifetimes (ca. 1.2 ns) and UV-Vis absorption spectra, overlapping with the spectrum of DMA with molar absorption coefficients of 2.7-4.6 × 104 M-1cm-1, preclude the standard photochemical exciplex formation pathway via selective optical generation of the local excited state of the donor and its bulk quenching by the acceptor. However, under X-rays, the efficient assembly of such exciplexes proceeds via the recombination of radical ion pairs, which delivers the two partners close to each other and ensures a sufficient energy deposition. The exciplex emission is completely quenched by the equilibration of the solution with air, providing a lower bound of exciplex emission lifetime of ca. 200 ns. The recombination nature of the exciplexes is confirmed by the magnetic field sensitivity of the exciplex emission band inherited from the magnetic field sensitivity from the recombination of spin-correlated radical ion pairs. Exciplex formation in such systems is further supported by DFT calculations. These first exciplexes from fully fluorinated compounds show the largest known red shift of the exciplex emission from the local emission band, suggesting the potential of perfluoro compounds for optimizing optical emitters.


Alkanes , Aniline Compounds , X-Rays , Aniline Compounds/chemistry , Alkanes/chemistry , Recombination, Genetic
14.
Nat Struct Mol Biol ; 30(4): 521-526, 2023 04.
Article En | MEDLINE | ID: mdl-36997762

Alkane monooxygenase (AlkB) is a widely occurring integral membrane metalloenzyme that catalyzes the initial step in the functionalization of recalcitrant alkanes with high terminal selectivity. AlkB enables diverse microorganisms to use alkanes as their sole carbon and energy source. Here we present the 48.6-kDa cryo-electron microscopy structure of a natural fusion from Fontimonas thermophila between AlkB and its electron donor AlkG at 2.76 Å resolution. The AlkB portion contains six transmembrane helices with an alkane entry tunnel within its transmembrane domain. A dodecane substrate is oriented by hydrophobic tunnel-lining residues to present a terminal C-H bond toward a diiron active site. AlkG, an [Fe-4S] rubredoxin, docks via electrostatic interactions and sequentially transfers electrons to the diiron center. The archetypal structural complex presented reveals the basis for terminal C-H selectivity and functionalization within this broadly distributed evolutionary class of enzymes.


Alkanes , Cryoelectron Microscopy , Cytochrome P-450 CYP4A/chemistry , Alkanes/chemistry
15.
Eur J Med Chem ; 251: 115256, 2023 May 05.
Article En | MEDLINE | ID: mdl-36944273

Up to date, there are still significantly unmet clinical needs for treatment of the fatal visceral leishmaniasis; a neglected tropical disease. Herein, a recently reported antileishmanial hit sulfuretin analog suffering from a low potency and a problematic aqueous solubility that hindered further development was used as a starting point. A mitigation rational via incorporation of O6-aminoalkyl moiety suggest structures analogous to literature-known compounds as cholinesterase inhibitors. Consequently, preparation and repurposing of a library of these compounds unveiled their potential activity against the parasite Leishmania donovani promastigotes. Further evaluation against intracellular form of the parasite and host cells suggested compounds 2a, 2c, and 2o derived from sulfuretin analogs bearing 2'-methoxy or 2',5'-dimethoxy substituents at ring-B as promising lead compounds with potential activity and acceptable safety window relative to the standard edelfosine. In silico simulation predicted plausible binding modes of these compounds to L. donovani fumarate reductase. Together this work presents compound 2o as a potential lead compound for further development.


Antiprotozoal Agents , Benzofurans , Leishmania donovani , Leishmaniasis, Visceral , Humans , Antiprotozoal Agents/chemistry , Benzofurans/metabolism , Flavonoids/therapeutic use , Leishmaniasis, Visceral/drug therapy , Alkanes/chemistry
16.
Molecules ; 28(4)2023 Feb 15.
Article En | MEDLINE | ID: mdl-36838842

Previously synthesized and spectroscopically characterized mononuclear nonheme, low-spin iron(III)-iodosylbenzene complex bearing a bidentate pyridyl-benzimidazole ligands has been investigated in alkane and aldehyde oxidation reactions. The in situ generated Fe(III) iodosylbenzene intermediate is a reactive oxidant capable of activating the benzylic C-H bond of alkane. Its electrophilic character was confirmed by using substituted benzaldehydes and a modified ligand framework containing electron-donating (Me) substituents. Furthermore, the results of kinetic isotope experiments (KIE) using deuterated substrate indicate that the C-H activation can be interpreted through a tunneling-like HAT mechanism. Based on the results of the kinetic measurements and the relatively high KIE values, we can conclude that the activation of the C-H bond mediated by iron(III)-iodosylbenzene adducts is the rate-determining step.


Aldehydes , Iron , Iron/chemistry , Alkanes/chemistry , Hydroxylation , Oxidation-Reduction
17.
J Chem Ecol ; 49(3-4): 103-115, 2023 Apr.
Article En | MEDLINE | ID: mdl-36749496

The seven-spotted ladybug is a widespread species in the Palearctic, and also acclimated in the Nearctic. It has been classified into different species on the basis of certain morphological characteristics, the geographical origin, and the genitalia structure of both sexes. The morphotypes of North Africa and the Canary Islands are separated, under the name of Coccinella algerica Kovár, 1977, from the rest of the Palearctic and Nearctic populations of Coccinella septempunctata Linnaeus, 1758. In this study, we investigated, on one hand, whether potential reproductive barriers have been established during evolution between the geographically isolated North African and the European seven-spotted ladybugs by performing reciprocal crosses. On the other hand, we assessed their cuticular hydrocarbon (CHC) divergence by GC-MS. The 33 CHCs indentified are with a skeleton of 23 to 32 carbon atoms. These CHCs are linear alkanes (24.9 ± 3.6%) and methyl-branched alkanes (75.1 ± 3.6%) including monomethylalkanes (48.8 ± 2.4%), dimethylalkanes (24.6 ± 4.0%) and trimethylalkanes (2.0 ± 1.0%). Although all the CHC compounds identified are present in the two seven-spotted ladybugs and their F1 and F2 hybrids, their profiles diverged significantly. However, these chemical divergences have not altered the sexual communication to cause reproductive isolation. The two ladybugs interbreed and leave viable and fertile offspring, with even a heterosis effect on reproductive performances, without phenotypic degradation after the F1 generation. So, these chemical differences are just an intraspecific variability in response to heterogeneous environments. The two types of ladybugs can be considered as two different races of the same species with reduced genetic divergence.


Coleoptera , Hydrocarbons , Animals , Female , Male , Alkanes/chemistry , Coleoptera/physiology , Fertility , Hydrocarbons/chemistry , Reproductive Isolation , Chitin/chemistry
18.
J Am Chem Soc ; 145(2): 787-793, 2023 01 18.
Article En | MEDLINE | ID: mdl-36608280

Tertiary nitroalkanes and the corresponding α-tertiary amines represent important motifs in bioactive molecules and natural products. The C-alkylation of secondary nitroalkanes with electrophiles is a straightforward strategy for constructing tertiary nitroalkanes; however, controlling the stereoselectivity of this type of reaction remains challenging. Here, we report a highly chemo- and stereoselective C-alkylation of nitroalkanes with alkyl halides catalyzed by an engineered flavin-dependent "ene"-reductase (ERED). Directed evolution of the old yellow enzyme from Geobacillus kaustophilus provided a triple mutant, GkOYE-G7, capable of synthesizing tertiary nitroalkanes in high yield and enantioselectivity. Mechanistic studies indicate that the excitation of an enzyme-templated charge-transfer complex formed between the substrates and cofactor is responsible for radical initiation. Moreover, a single-enzyme two-mechanism cascade reaction was developed to prepare tertiary nitroalkanes from simple nitroalkenes, highlighting the potential to use one enzyme for two mechanistically distinct reactions.


Alkanes , Nitro Compounds , Alkanes/chemistry , Nitro Compounds/chemistry , Alkylation , Catalysis
19.
Bioorg Med Chem ; 78: 117148, 2023 01 15.
Article En | MEDLINE | ID: mdl-36580743

2'-Amino-LNA has the potential to acquire various functions through chemical modification at the 2'-nitrogen atom. This study focused on 2'-N-alkylaminocarbonyl 2'-amino-LNA, which is a derivative of 2'-amino-LNA. We evaluated its practical usefulness as a chemical modification of anti-miRNA oligonucleotide. The synthesis of phosphoramidites of 2'-N-alkylaminocarbonyl substituted 2'-amino-LNA bearing thymine and 5-methylcytosine proceeded in good yields. Incorporating the 2'-N-alkylaminocarbonyl-2'-amino-LNA monomers into oligonucleotides improved the duplex stability for complementary RNA strands and robust nuclease resistance. Moreover, 2'-N-alkylaminocarbonyl-2'-amino-LNA is a promising scaffold that significantly increases the potency of anti-miRNA oligonucleotides.


MicroRNAs , Oligonucleotides/pharmacology , Alkanes/chemistry
20.
Environ Sci Technol ; 56(22): 15737-15745, 2022 11 15.
Article En | MEDLINE | ID: mdl-36240042

Per- and polyfluoroalkyl substances (PFAS) form weak van der Waals (vdW) interactions, which render this class of chemicals more volatile than nonfluorinated analogues. Here, the hexadecane/air partition coefficient (KHxd/air) values at 25 °C, as an index of vdW interaction strength and volatility, were determined for 64 neutral PFAS using the variable phase ratio headspace and gas chromatographic retention methods. Log KHxd/air values increased linearly with increasing number of CF2 units, and the increase in log KHxd/air value per CF2 was smaller than that per CH2. Comparison of PFAS sharing the same perfluoroalkyl chain length but with different functional groups demonstrated that KHxd/air was highest for the N-alkyl perfluoroalkanesulfonamidethanols and lowest for the perfluoroalkanes and that the size of the nonfluorinated structure determines the difference in KHxd/air between PFAS groups. Two models, the quantum chemistry-based COSMOtherm model and an iterative fragment selection quantitative structure-property relationship (IFS-QSPR) model, accurately predicted the log KHxd/air values of the PFAS with root-mean-square errors of 0.55 and 0.35, respectively. COSMOtherm showed minor systematic errors for all PFAS, whereas IFS-QSPR exhibited large errors for a few PFAS groups that were outside the model applicability domain. The present data set will be useful as a benchmark of the volatilities of the various PFAS and for predicting other partition coefficient values of PFAS.


Fluorocarbons , Fluorocarbons/analysis , Alkanes/analysis , Alkanes/chemistry , Quantitative Structure-Activity Relationship , Chromatography, Gas
...